Distribution‑free multiple imputation in incomplete two‑way tables

Authors

  • Sergio Arciniegas-Alarcón Escola Superior de Agricultura Luiz de Queiroz/ Universidade de São Paulo
  • Carlos Tadeu dos Santos Dias Escola Superior de Agricultura Luiz de Queiroz/ Universidade de São Paulo
  • Marisol García-Peña Escola Superior de Agricultura Luiz de Queiroz/ Universidade de São Paulo

DOI:

https://doi.org/10.1590/S1678-3921.pab2014.v49.19358

Keywords:

missing data, singular value decomposition, multi‑environment trials, unbalanced experiments, genotype x environment interaction, plant breeding

Abstract

The objective of this work was to propose a new distribution‑free multiple imputation algorithm, through modifications of the simple imputation method recently developed by Yan in order to circumvent the problem of unbalanced experiments. The method uses the singular value decomposition of a matrix and was tested using simulations based on two complete matrices of real data, obtained from eucalyptus and sugarcane trials, with values deleted randomly at different percentages. The quality of the imputations was evaluated by a measure of overall accuracy that combines the variance between imputations and their mean square deviations in relation to the deleted values. The best alternative for multiple imputation is a multiplicative model that includes weights near to 1 for the eigenvalues calculated with the decomposition. The proposed methodology does not depend on distributional or structural assumptions and does not have any restriction regarding the pattern or the mechanism of the missing data.

Author Biography

Sergio Arciniegas-Alarcón, Escola Superior de Agricultura Luiz de Queiroz/ Universidade de São Paulo

 

 

 

Published

2014-10-20

How to Cite

Arciniegas-Alarcón, S., Dias, C. T. dos S., & García-Peña, M. (2014). Distribution‑free multiple imputation in incomplete two‑way tables. Pesquisa Agropecuaria Brasileira, 49(9), 683–691. https://doi.org/10.1590/S1678-3921.pab2014.v49.19358

Issue

Section

GENETICS